FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane2_Index18_1.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 19210424 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 4171395 | 2.604321 | 5.3543134 | 1 |
| CCTGG | 4173175 | 2.592721 | 5.896252 | 1 |
| GAAGA | 4044925 | 2.5441167 | 5.2142386 | 2 |
| CTTCT | 4163065 | 2.535815 | 5.8563123 | 1 |
| AAGAA | 4032495 | 2.5236661 | 5.1691637 | 2 |
| CTGGA | 3945875 | 2.4605901 | 9.171127 | 1 |
| TCCAG | 3818800 | 2.360737 | 5.500718 | 2 |
| CTGCT | 3805580 | 2.3410878 | 5.249763 | 1 |
| CTCCT | 3789205 | 2.3108392 | 7.519524 | 1 |
| CTGGG | 3578225 | 2.2424982 | 8.559603 | 1 |
| CAGGA | 3578115 | 2.242199 | 5.5491843 | 1 |
| CTTCA | 3611160 | 2.2104213 | 6.0509696 | 1 |
| CTCCA | 3540080 | 2.169495 | 7.8526974 | 1 |
| CCCAG | 3464280 | 2.1441295 | 7.1400847 | 1 |
| CAGAA | 3321030 | 2.0707333 | 5.240798 | 1 |
| CTCTG | 3268100 | 2.0104446 | 6.6490436 | 1 |
| CTGGC | 3069630 | 1.9071082 | 5.5070853 | 1 |
| TGGAA | 2967875 | 1.8575829 | 5.324696 | 2 |
| CTGAA | 2970305 | 1.8430134 | 5.9497027 | 1 |
| CTTTT | 2973180 | 1.8088744 | 5.378684 | 1 |
| CTCAG | 2798060 | 1.7297277 | 6.650417 | 1 |
| CTGAG | 2766565 | 1.7251894 | 5.1387706 | 1 |
| CTTTG | 2772630 | 1.7036151 | 5.4286604 | 1 |
| CTGGT | 2715940 | 1.685358 | 5.2915783 | 1 |
| CTTGG | 2629390 | 1.6316499 | 5.5841103 | 1 |